Note the -u your-project, this is necessary to assign the billing project to the request for any egress costs (even though an ls does not incur egress, all operations still need a billing account). You will receive this bucket name from our data request service team, but it will look something like: hmf-dr-123, and you can inspect it with gsutil like so: gsutil -u your-project ls gs://hmf-dr-123 A manifest JSON file, which will contain Google Storage URLs to any DNA cram or RNASeq fastq data.If applicable, a germline.tar containing the germline data.If applicable, a somatics.tar containing the somatic data.If applicable, a metadata.tar containing the clinical data.We create a unique bucket for each data request which contains: You can check which account is authenticated with: gcloud auth listĪll data access will be performed with the gsutil or via the Google Cloud Storage APIs. Authenticate with the account with which you applied for the data access. You will be taken to a browser to authenticate. Log into the SDK with the following command: gcloud auth login Locally will not be persisted to your own computer. Note: The cloud shell runs in a virtual machine, so anything downloaded Or you can also use the Cloud Shell available in the console. Please ensure you've installed the Google Cloud SDK This guide will perform all operations via the command line. We assume you have already acquired an account, if not please read our Getting a Google Account page in this documentation repository. It is not meant to be an exhaustive tutorial on GCP,Īnd we suggest getting background on the key services in GCP via the following tuturials: This guide is meant to give you the basic steps and knowledge to access the data for which you have been approved via the Google Cloud Platform (GCP). Accessing Data Through Google Cloud Platform Welcome to Hartwig Medical Foundation’s documentation site! View on GitHub Accessing Data Through Google Cloud Platform Contents Accessing Data Through Google Cloud Platform | Hartwig Medical Foundation Skip to the content.
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